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  2. List of molecular graphics systems - Wikipedia

    en.wikipedia.org/wiki/List_of_molecular_graphics...

    Standalone program [21] Edit, visualize and run simulations on various molecular systems. Spartan: MM QM: Proprietary [22] Standalone program [23] Visualize and edit biomolecules, extract bound ligands from PDB files for further computational analysis, full molecular mechanics and quantum chemical calculations package with streamlined graphical ...

  3. Molecule editor - Wikipedia

    en.wikipedia.org/wiki/Molecule_editor

    Molecule editor. A molecule editor is a computer program for creating and modifying representations of chemical structures . Molecule editors can manipulate chemical structure representations in either a simulated two-dimensional space or three-dimensional space, via 2D computer graphics or 3D computer graphics, respectively. Two-dimensional ...

  4. Olex2 - Wikipedia

    en.wikipedia.org/wiki/Olex2

    Olex2. Olex [1] [2] and Olex2 [3] [4] are versatile software for crystallographic research. Olex used to be a research project developed during PhD to implement topological (as connectivity) analysis of polymeric chemical structures and still is widely used around the world. Olex2 is an open source project with the C++ code portable to Windows ...

  5. XDrawChem - Wikipedia

    en.wikipedia.org/wiki/XDrawChem

    Type. Molecular editor. License. GNU GPL. XDrawChem is a free software program for drawing chemical structural formulas, available for Unix and macOS. It is distributed under the GNU GPL. In Microsoft Windows this program is called WinDrawChem. [1]

  6. List of RNA structure prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA_structure...

    Structure prediction can be constrained using experimental data, including SHAPE, enzymatic cleavage, and chemical modification accessibility. Graphical user interfaces are available for Windows, Mac OS X, Linux. Programs are also available for use with Unix-style text interfaces. Also, a C++ class library is available. Yes: source & binaries ...

  7. Computational chemistry - Wikipedia

    en.wikipedia.org/wiki/Computational_chemistry

    Modelled using WebMO. [ 1] Computational chemistry is a branch of chemistry that uses computer simulations to assist in solving chemical problems. [ 2] It uses methods of theoretical chemistry incorporated into computer programs to calculate the structures and properties of molecules, groups of molecules, and solids. [ 3]

  8. List of chemical process simulators - Wikipedia

    en.wikipedia.org/wiki/List_of_chemical_process...

    This is a list of software used to simulate the material and energy balances of chemical process plants. Applications for this include design studies, engineering studies, design audits, debottlenecking studies, control system check-out, process simulation, dynamic simulation, operator training simulators, pipeline management systems, production management systems, digital twins.

  9. List of cheminformatics toolkits - Wikipedia

    en.wikipedia.org/wiki/List_of_Cheminformatics...

    Cheminformatics toolkits are notable software development kits that allow cheminformaticians to develop custom computer applications for use in virtual screening, chemical database mining, and structure-activity studies. [ 1][ 2] Toolkits are often used for experimentation with new methodologies. Their most important functions deal with the ...